Add graphical duodenal ulcer interview
This commit is contained in:
@@ -34,6 +34,12 @@ public static class CcsCaseValidator
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if (string.IsNullOrWhiteSpace(item.PresentingLocation)) errors.Add(prefix + "presentingLocation required");
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if (item.RealTimeMinutes is not (10 or 20)) errors.Add(prefix + "realTimeMinutes must be 10 or 20");
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if (item.Difficulty is < 1 or > 5) errors.Add(prefix + "difficulty must be between 1 and 5");
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if (item.ExperienceMode is not (CcsExperienceModes.Management or CcsExperienceModes.GraphicalInterview))
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errors.Add(prefix + "experienceMode is invalid");
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if (item.ExperienceMode == CcsExperienceModes.GraphicalInterview
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&& (string.IsNullOrWhiteSpace(item.GraphicalPresentation.SceneKey)
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|| string.IsNullOrWhiteSpace(item.GraphicalPresentation.PatientAssetKey)))
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errors.Add(prefix + "graphical interviews require sceneKey and patientAssetKey");
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if (string.IsNullOrWhiteSpace(item.InitialChart.PatientSummary) || string.IsNullOrWhiteSpace(item.InitialChart.ReasonForEncounter))
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errors.Add(prefix + "initial patient summary and reason are required");
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if (!item.AllowedLocations.Contains(item.PresentingLocation, StringComparer.OrdinalIgnoreCase))
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@@ -73,6 +79,10 @@ public static class CcsCaseValidator
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if (criterion.ActionType == "order" && !orderCodes.Contains(target)) errors.Add(prefix + $"criterion {criterion.Id} references unknown order {target}");
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if (criterion.ActionType == "exam" && !examCodes.Contains(target, StringComparer.OrdinalIgnoreCase)) errors.Add(prefix + $"criterion {criterion.Id} references unknown exam {target}");
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if (criterion.ActionType == "location" && !item.AllowedLocations.Contains(target, StringComparer.OrdinalIgnoreCase)) errors.Add(prefix + $"criterion {criterion.Id} references unknown location {target}");
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if (criterion.ActionType == "dialogue_choice"
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&& !item.InitialInterview.Topics.Any(value => value.Id.Equals(target, StringComparison.OrdinalIgnoreCase))
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&& !item.InitialInterview.Nodes.SelectMany(value => value.Choices).Any(value => value.Id.Equals(target, StringComparison.OrdinalIgnoreCase)))
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errors.Add(prefix + $"criterion {criterion.Id} references unknown dialogue choice {target}");
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}
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}
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}
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@@ -123,6 +133,55 @@ public static class CcsCaseValidator
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private static void ValidateInterview(CcsInitialInterview interview, string prefix, List<string> errors)
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{
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if (interview.Topics.Count > 0)
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{
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if (interview.Nodes.Count > 0 || !string.IsNullOrWhiteSpace(interview.StartNodeId))
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errors.Add(prefix + "initialInterview cannot combine topics with nodes");
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if (string.IsNullOrWhiteSpace(interview.OpeningPatientText))
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errors.Add(prefix + "topic interview requires openingPatientText");
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if (string.IsNullOrWhiteSpace(interview.FinishChoiceText) || string.IsNullOrWhiteSpace(interview.ClosingPatientText))
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errors.Add(prefix + "topic interview requires finishChoiceText and closingPatientText");
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var topicIds = interview.Topics.Select(value => value.Id).ToList();
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if (topicIds.Any(string.IsNullOrWhiteSpace)
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|| topicIds.Distinct(StringComparer.OrdinalIgnoreCase).Count() != topicIds.Count)
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errors.Add(prefix + "interview topic ids must be present and unique");
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if (topicIds.Contains("finish_interview", StringComparer.OrdinalIgnoreCase))
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errors.Add(prefix + "finish_interview is a reserved interview topic id");
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if (!interview.Topics.Any(value => value.Required))
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errors.Add(prefix + "topic interview requires at least one required topic");
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foreach (var topic in interview.Topics)
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{
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if (string.IsNullOrWhiteSpace(topic.ClinicianText))
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errors.Add(prefix + $"interview topic {topic.Id} requires clinicianText");
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if (string.IsNullOrWhiteSpace(topic.PatientText))
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errors.Add(prefix + $"interview topic {topic.Id} requires patientText");
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foreach (var prerequisite in topic.PrerequisiteTopicIds)
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if (!topicIds.Contains(prerequisite, StringComparer.OrdinalIgnoreCase)
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|| prerequisite.Equals(topic.Id, StringComparison.OrdinalIgnoreCase))
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errors.Add(prefix + $"interview topic {topic.Id} has an invalid prerequisite {prerequisite}");
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}
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var topicMap = interview.Topics.ToDictionary(value => value.Id, StringComparer.OrdinalIgnoreCase);
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var resolved = new HashSet<string>(StringComparer.OrdinalIgnoreCase);
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var resolving = new HashSet<string>(StringComparer.OrdinalIgnoreCase);
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bool ResolveTopic(string topicId)
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{
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if (resolving.Contains(topicId))
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{
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errors.Add(prefix + "interview topic prerequisites cannot contain cycles");
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return false;
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}
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if (resolved.Contains(topicId)) return true;
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resolving.Add(topicId);
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if (topicMap.TryGetValue(topicId, out var topic))
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foreach (var prerequisite in topic.PrerequisiteTopicIds.Where(topicMap.ContainsKey))
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ResolveTopic(prerequisite);
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resolving.Remove(topicId);
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resolved.Add(topicId);
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return true;
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}
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foreach (var topic in interview.Topics) ResolveTopic(topic.Id);
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return;
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}
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if (string.IsNullOrWhiteSpace(interview.StartNodeId) && interview.Nodes.Count == 0) return;
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if (string.IsNullOrWhiteSpace(interview.StartNodeId)) errors.Add(prefix + "initialInterview.startNodeId required");
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if (interview.Nodes.Count == 0) { errors.Add(prefix + "initialInterview.nodes required"); return; }
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@@ -0,0 +1,92 @@
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using Microsoft.Extensions.Configuration;
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using MongoDB.Driver;
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using QuestionsApi.Models;
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using System.Text.Json;
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namespace QuestionsApi.Services;
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public static class CcsPromotionCommand
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{
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public static async Task<int> RunAsync(string[] args, TextWriter output)
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{
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var apply = args.Contains("--apply", StringComparer.OrdinalIgnoreCase);
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var sourceIndex = Array.FindIndex(args, value => value.Equals("--source", StringComparison.OrdinalIgnoreCase));
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var source = sourceIndex >= 0 && sourceIndex + 1 < args.Length
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? args[sourceIndex + 1]
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: Path.Combine(AppContext.BaseDirectory, "content", "ccs");
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var files = File.Exists(source)
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? new[] { source }
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: Directory.Exists(source)
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? Directory.EnumerateFiles(source, "*.json", SearchOption.AllDirectories).ToArray()
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: [];
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if (files.Length == 0)
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{
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await output.WriteLineAsync($"CCS content not found: {source}");
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return 2;
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}
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var json = new JsonSerializerOptions(JsonSerializerDefaults.Web) { PropertyNameCaseInsensitive = true };
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var request = new CcsImportRequest();
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foreach (var file in files)
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{
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var parsed = JsonSerializer.Deserialize<CcsImportRequest>(await File.ReadAllTextAsync(file), json)
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?? throw new InvalidDataException($"Could not parse CCS content: {file}");
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request.Orders.AddRange(parsed.Orders);
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request.Cases.AddRange(parsed.Cases);
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}
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var duplicateOrders = request.Orders.GroupBy(value => value.Code, StringComparer.OrdinalIgnoreCase)
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.Where(value => value.Count() > 1).Select(value => value.Key).ToList();
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if (duplicateOrders.Count > 0)
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throw new InvalidDataException($"Duplicate CCS order codes: {string.Join(", ", duplicateOrders)}");
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var configuration = new ConfigurationBuilder().AddJsonFile("appsettings.json", optional: true)
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.AddEnvironmentVariables().Build();
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var mongo = new MongoDatabaseProvider(configuration);
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var orders = mongo.Database.GetCollection<CcsOrderDefinition>("CcsOrderCatalog");
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var cases = mongo.Database.GetCollection<CcsCaseRevision>("CcsCaseRevisions");
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var existingCodes = (await orders.Find(Builders<CcsOrderDefinition>.Filter.Empty)
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.Project(value => value.Code).ToListAsync()).ToHashSet(StringComparer.OrdinalIgnoreCase);
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var errors = CcsCaseValidator.ValidateImport(request, existingCodes);
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if (errors.Count > 0)
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{
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foreach (var error in errors) await output.WriteLineAsync(error);
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return 1;
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}
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await output.WriteLineAsync($"Validated {request.Cases.Count} CCS case(s) and {request.Orders.Count} order(s).");
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if (!apply)
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{
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await output.WriteLineAsync("Dry run only. Pass --apply to publish.");
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return 0;
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}
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foreach (var order in request.Orders)
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{
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order.Code = order.Code.Trim().ToLowerInvariant();
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order.UpdatedUtc = DateTime.UtcNow;
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await orders.ReplaceOneAsync(value => value.Code == order.Code, order, new ReplaceOptions { IsUpsert = true });
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}
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var created = 0;
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var unchanged = 0;
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foreach (var incoming in request.Cases)
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{
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var current = await cases.Find(value => value.ExternalId == incoming.ExternalId && value.IsCurrent)
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.SortByDescending(value => value.Version).FirstOrDefaultAsync();
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if (current is not null && CcsStore.CaseContentDocument(current).Equals(CcsStore.CaseContentDocument(incoming)))
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{
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unchanged++;
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continue;
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}
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if (current is not null)
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await cases.UpdateOneAsync(value => value.Id == current.Id,
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Builders<CcsCaseRevision>.Update.Set(value => value.IsCurrent, false));
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incoming.Id = null;
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incoming.Version = (current?.Version ?? 0) + 1;
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incoming.IsCurrent = true;
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incoming.CreatedUtc = DateTime.UtcNow;
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await cases.InsertOneAsync(incoming);
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created++;
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}
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await output.WriteLineAsync($"Promotion complete: {created} created, {unchanged} unchanged.");
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return 0;
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}
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}
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@@ -50,10 +50,16 @@ public sealed class CcsStore
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await _orders.ReplaceOneAsync(value => value.Code == order.Code, order, new ReplaceOptions { IsUpsert = true });
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}
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var created = 0;
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var skipped = 0;
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foreach (var incoming in request.Cases)
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{
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var current = await _cases.Find(value => value.ExternalId == incoming.ExternalId && value.IsCurrent)
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.SortByDescending(value => value.Version).FirstOrDefaultAsync();
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if (current is not null && CaseContentDocument(current).Equals(CaseContentDocument(incoming)))
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{
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skipped++;
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continue;
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}
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if (current is not null)
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await _cases.UpdateOneAsync(value => value.Id == current.Id, Builders<CcsCaseRevision>.Update.Set(value => value.IsCurrent, false));
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incoming.Id = null;
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@@ -63,7 +69,17 @@ public sealed class CcsStore
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await _cases.InsertOneAsync(incoming);
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created++;
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}
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return new CcsImportResponse { OrdersUpserted = request.Orders.Count, CasesCreated = created };
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return new CcsImportResponse { OrdersUpserted = request.Orders.Count, CasesCreated = created, CasesSkipped = skipped };
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}
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internal static BsonDocument CaseContentDocument(CcsCaseRevision value)
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{
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var document = value.ToBsonDocument();
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document.Remove("_id");
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document.Remove(nameof(CcsCaseRevision.Version));
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document.Remove(nameof(CcsCaseRevision.IsCurrent));
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document.Remove(nameof(CcsCaseRevision.CreatedUtc));
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return document;
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}
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public async Task<List<CcsCaseSummary>> ListCasesAsync() =>
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@@ -109,6 +125,7 @@ public sealed class CcsStore
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if (definition is null) throw new KeyNotFoundException("CCS case not found.");
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var now = DateTime.UtcNow;
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var interview = EffectiveInterview(definition);
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var interviewStartNodeId = definition.InitialInterview.Topics.Count > 0 ? "opening" : interview.StartNodeId;
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var attempt = new CcsAttempt
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{
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UserId = userId,
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@@ -118,7 +135,7 @@ public sealed class CcsStore
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CaseVersion = definition.Version,
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Mode = CcsAttemptModes.Timed,
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OpeningCompleted = false,
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InterviewNodeId = interview.StartNodeId,
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InterviewNodeId = interviewStartNodeId,
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Location = definition.PresentingLocation,
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CurrentVitals = new Dictionary<string, string>(definition.InitialChart.Vitals),
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VitalHistory =
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@@ -126,9 +143,11 @@ public sealed class CcsStore
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new CcsVitalSnapshot { SimulatedMinute = 0, Values = new Dictionary<string, string>(definition.InitialChart.Vitals) }
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],
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ActiveOrderCodes = definition.InitialChart.InitialOrderCodes.Distinct(StringComparer.OrdinalIgnoreCase).ToList(),
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DeadlineUtc = now.AddMinutes(ActivePhaseMinutes(definition.RealTimeMinutes)),
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HardDeadlineUtc = now.AddMinutes(definition.RealTimeMinutes),
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RatingEligible = true,
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DeadlineUtc = definition.ExperienceMode == CcsExperienceModes.GraphicalInterview
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? null : now.AddMinutes(ActivePhaseMinutes(definition.RealTimeMinutes)),
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HardDeadlineUtc = definition.ExperienceMode == CcsExperienceModes.GraphicalInterview
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? null : now.AddMinutes(definition.RealTimeMinutes),
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RatingEligible = definition.ExperienceMode != CcsExperienceModes.GraphicalInterview,
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Chart =
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[
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new CcsChartEntry { Category = CcsChartCategories.Progress, Code = "reason_for_encounter", Title = "Reason for encounter", Text = definition.InitialChart.ReasonForEncounter },
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@@ -416,9 +435,7 @@ public sealed class CcsStore
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? attempt.VitalHistory
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: [new CcsVitalSnapshot { SimulatedMinute = attempt.SimulatedMinute, Values = new Dictionary<string, string>(attempt.CurrentVitals) }];
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CcsInterviewStateResponse? interview = null;
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var interviewDefinition = EffectiveInterview(definition);
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var currentInterviewNode = interviewDefinition.Nodes.FirstOrDefault(value =>
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value.Id.Equals(attempt.InterviewNodeId, StringComparison.OrdinalIgnoreCase));
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var currentInterviewNode = CurrentInterviewNode(attempt, definition);
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if (currentInterviewNode is not null)
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{
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interview = new CcsInterviewStateResponse
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@@ -440,9 +457,13 @@ public sealed class CcsStore
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FinalOrdersDeadlineUtc = attempt.FinalOrdersDeadlineUtc,
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CreatedUtc = attempt.CreatedUtc, RealTimeMinutes = definition.RealTimeMinutes,
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ElapsedSeconds = Math.Max(0, (int)Math.Round(((attempt.CompletedUtc ?? DateTime.UtcNow) - attempt.CreatedUtc).TotalSeconds)),
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ExperienceMode = definition.ExperienceMode, GraphicalPresentation = definition.GraphicalPresentation,
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PatientSummary = definition.InitialChart.PatientSummary, ReasonForEncounter = definition.InitialChart.ReasonForEncounter,
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Appearance = definition.InitialChart.Appearance, History = definition.InitialChart.History,
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HistorySections = definition.InitialChart.HistorySections,
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Appearance = definition.InitialChart.Appearance,
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History = definition.ExperienceMode == CcsExperienceModes.GraphicalInterview && !completed
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? "" : definition.InitialChart.History,
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HistorySections = definition.ExperienceMode == CcsExperienceModes.GraphicalInterview && !completed
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? [] : definition.InitialChart.HistorySections,
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Vitals = attempt.CurrentVitals, Chart = attempt.Chart, ActiveOrderCodes = attempt.ActiveOrderCodes,
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ActiveOrders = activeOrders, VitalHistory = vitalHistory,
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PendingResults = attempt.PendingResults.Select(value => new CcsPendingResult
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@@ -452,6 +473,8 @@ public sealed class CcsStore
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AvailableExams = attempt.State == CcsAttemptStates.Active ? definition.Exams : [],
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AllowedLocations = attempt.State == CcsAttemptStates.Active ? definition.AllowedLocations : [],
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Interview = interview,
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InterviewDebrief = completed && definition.ExperienceMode == CcsExperienceModes.GraphicalInterview
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? definition.InitialInterview.Debrief : null,
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Score = completed ? attempt.Score : null, Rating = completed ? attempt.Rating : null,
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References = completed ? definition.References : []
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};
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@@ -460,6 +483,11 @@ public sealed class CcsStore
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public static void ApplyDialogueChoice(CcsAttempt attempt, CcsCaseRevision definition, string choiceId, DateTime now)
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{
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if (attempt.OpeningCompleted == true) throw new InvalidOperationException("The initial interview is already complete.");
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if (definition.InitialInterview.Topics.Count > 0)
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{
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ApplyTopicChoice(attempt, definition.InitialInterview, choiceId, now);
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return;
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}
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var interview = EffectiveInterview(definition);
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var node = interview.Nodes.FirstOrDefault(value =>
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value.Id.Equals(attempt.InterviewNodeId, StringComparison.OrdinalIgnoreCase))
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@@ -730,9 +758,73 @@ public sealed class CcsStore
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ExternalId = value.ExternalId, Title = value.Title, System = value.System,
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PresentingLocation = value.PresentingLocation, RealTimeMinutes = value.RealTimeMinutes,
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Difficulty = value.Difficulty, Tags = value.Tags,
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InteractiveInterviewAvailable = EffectiveInterview(value).Nodes.Count > 0
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InteractiveInterviewAvailable = value.InitialInterview.Topics.Count > 0 || EffectiveInterview(value).Nodes.Count > 0,
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GraphicalPresentationAvailable = !string.IsNullOrWhiteSpace(value.GraphicalPresentation.SceneKey)
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&& !string.IsNullOrWhiteSpace(value.GraphicalPresentation.PatientAssetKey),
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ExperienceMode = value.ExperienceMode, GraphicalPresentation = value.GraphicalPresentation
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};
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internal static CcsDialogueNode? CurrentInterviewNode(CcsAttempt attempt, CcsCaseRevision definition)
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{
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var topicInterview = definition.InitialInterview;
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if (topicInterview.Topics.Count > 0)
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{
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if (attempt.InterviewNodeId.Equals("complete", StringComparison.OrdinalIgnoreCase))
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return new CcsDialogueNode
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{
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Id = "complete", PatientText = topicInterview.ClosingPatientText, IsTerminal = true
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};
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var patientText = attempt.InterviewNodeId.Equals("opening", StringComparison.OrdinalIgnoreCase)
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? topicInterview.OpeningPatientText
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: topicInterview.Topics.FirstOrDefault(value =>
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value.Id.Equals(attempt.InterviewNodeId, StringComparison.OrdinalIgnoreCase))?.PatientText;
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if (string.IsNullOrWhiteSpace(patientText)) return null;
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var visited = attempt.InterviewChoiceIds.ToHashSet(StringComparer.OrdinalIgnoreCase);
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var choices = topicInterview.Topics.Where(value => !visited.Contains(value.Id)
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&& value.PrerequisiteTopicIds.All(visited.Contains))
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.Select(value => new CcsDialogueChoice
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{
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Id = value.Id, Text = value.ClinicianText, NextNodeId = value.Id
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}).ToList();
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if (topicInterview.Topics.Where(value => value.Required).All(value => visited.Contains(value.Id)))
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choices.Add(new CcsDialogueChoice
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{
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Id = "finish_interview", Text = topicInterview.FinishChoiceText, NextNodeId = "complete"
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});
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return new CcsDialogueNode
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{
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Id = attempt.InterviewNodeId, PatientText = patientText, Choices = choices
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};
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}
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var interview = EffectiveInterview(definition);
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return interview.Nodes.FirstOrDefault(value =>
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value.Id.Equals(attempt.InterviewNodeId, StringComparison.OrdinalIgnoreCase));
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}
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private static void ApplyTopicChoice(CcsAttempt attempt, CcsInitialInterview interview, string choiceId, DateTime now)
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{
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if (choiceId.Equals("finish_interview", StringComparison.OrdinalIgnoreCase))
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{
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var visited = attempt.InterviewChoiceIds.ToHashSet(StringComparer.OrdinalIgnoreCase);
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if (!interview.Topics.Where(value => value.Required).All(value => visited.Contains(value.Id)))
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throw new ArgumentException("Complete the core interview topics before finishing.");
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attempt.Actions.Add(Action("dialogue_choice", "finish_interview", attempt.SimulatedMinute, now));
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attempt.InterviewChoiceIds.Add("finish_interview");
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attempt.InterviewNodeId = "complete";
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attempt.OpeningCompleted = true;
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return;
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}
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var topic = interview.Topics.FirstOrDefault(value => value.Id.Equals(choiceId, StringComparison.OrdinalIgnoreCase))
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?? throw new ArgumentException("The dialogue choice is not available at the current interview node.");
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if (attempt.InterviewChoiceIds.Contains(topic.Id, StringComparer.OrdinalIgnoreCase))
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throw new ArgumentException("That interview topic has already been covered.");
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if (!topic.PrerequisiteTopicIds.All(value => attempt.InterviewChoiceIds.Contains(value, StringComparer.OrdinalIgnoreCase)))
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throw new ArgumentException("That interview topic is not available yet.");
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attempt.Actions.Add(Action("dialogue_choice", topic.Id, attempt.SimulatedMinute, now));
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attempt.InterviewChoiceIds.Add(topic.Id);
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attempt.InterviewNodeId = topic.Id;
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}
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||||
|
||||
internal static CcsInitialInterview EffectiveInterview(CcsCaseRevision definition)
|
||||
{
|
||||
if (!string.IsNullOrWhiteSpace(definition.InitialInterview.StartNodeId)
|
||||
|
||||
Reference in New Issue
Block a user